Gridification and portage of projects
Oral Communications:
- Viktors Bertie (IBM), Raphaël Bolze (CNRS), Frédéric Desprez (INRIA), Kevin Reed (IBM). Large Scale Execution of a Bioinformatic Application on a Volunteer Grid Workshop. The 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC-08), 14-18 April 2008, Miami, Florida, USA.
- Raphaël Bolze, Frédéric Desprez, Philippe d'Anfray. Les Journée Réseaux JRES-2007, 20-23 novembre 2007, Strasbourg, France.
MS2PH: FROM STRUCTURAL CHANGES TO PHENOTYPES OF HUMAN DISEASE.
Publications:
- Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O. MAGOS: multiple alignment and modelling server. Bioinformatics. 2006 Sep 1; 22 (17):2164-5.
- Friedrich A Ripp R Garnier N, Bettler E, Deléage G Poch O Moulinier L. Blast sampling for structural and functional analysis. BMC Bioinformatics. 2007 Feb 23; 8:62.
- Friedrich A, Moulinier L, Ripp R Garnier N, Bettler E, G and Deléage Poch O. BLAST Sampling for Structural Analysis. JOBIM, July 2005, Lyon.
- Friedrich A, Nguyen H. MS2PH Data Grid or Distributed Federation of BioMedical Datasources. ISIBio, November 2006, Nancy.
- Garnier N, Combet C, Geourjon C, Deleage G, Bettler E. Modeome: a system for creating and managing 3D models of proteins. JOBIM, July 2007, Marseille.
- Friedrich A, Nguyen H. MS2PH Data Grid or Federation of Distributed BioMedical Datasources. ISIBio, November 2006, Nancy.
- Garnier N, Combet C, Geourjon C, Deleage G, Bettler E. Modeome: un système de création et de gestion de modèles 3D de proteins. JOBIM, July 2007, Marseille.
- Hoan Nguyen, Anne Friedrich, Guillaume Berthommier, Laetitia Poidevin, Luc Moulinier, Raymond Ripp, Olivier Poch. Introduction du nouveau Centre de Données Biomedicales Décrypthon. CORIA 2008.
- Garnier N, Friedrich A, Nguyen H, Bettler E, Moulinier L, Geourjon C, Deléage G, Poch O. MAGOS: Multiple AliGnment and modelling Server. JOBIM, July 2006, Bordeaux.
- Friedrich A, Garnier N, Nguyen H, Bettler E, Deléage G, Poch O and Moulinier L. MS2PH-db: a new database to analyse proteins implicated in human genetic diseases. JOBIM, July 2006, Bordeaux.
- Nguyen H, Friedrich A, Benabbou Y, Moulinier L, Poche O. Introduction au nouveau centre de données Decrypthon. JOBIM, July 2007, Marseille
- Garnier N, Combet C, Geourjon C, Deleage G, Bettler E. Modeome: un système de création et de gestion de modèles 3D de proteins. JOBIM, July 2007, Marseille.
- Friedrich A. Mutation of the structural phenotypes of human disease: an integrative approach to change and their consequences. (21 December 2007).
DEVELOPMENT AND USE OF INFORMATION AND THEORETICAL APPROACHES FOR THE ANALYSIS OF RELATIONSHIPS THAT EXIST BETWEEN SPLICING DEFECTS AND GENETIC DISEASES.
Publications :
- Mitrasinovic PM. On the structural features of hairpin triloops in rRNA: from nucleotide to global conformational change upon ligand binding. J Struct Biol. 2006 Mar;153(3):207-22.
Large scale investigation of protein-protein, protein-DNA and protein-ligand interactions leading to drug targeting.
Posters :
- S. Sacquin-Mora, A. Carbone et R. Lavery. Large scale investigation of protein-protein interactions via cross docking simulations and Evolutionary Trace methods. M2Cell, Workshop on Modeling from Macromolecules to Cells, Abbaye de Fontevraud, Décembre 2005.
- S. Sacquin-Mora, A. Carbone et R. Lavery. Coupling of cross-docking simulations and Evolutionary Trace methods for the pre-diction of protein-protein interactions. Keystone Symposia on Multi-Protein Complexes Involved in Cell Regulation, Cambridge, Royaume-Uni, Aout 2006.
PARALLELIZATION OF A MONTE CARLO METHOD TO SORT ACTION POTENTIALS: IMPROVEMENT OF A TOOL FOR BASIC RESEARCH IN NEUROSCIENCES AND THE DIAGNOSIS OF NEUROMUSCULAR DISEASES.
Oral Communications:
- C. Pouzat, A. Ridolfi and P. Viot. Spike Sorting with R and GGobi. Congrès "use R" des utilisateurs de R à Vienne, 15-17 Juin 2006.
- C. Pouzat. Residuals and statistical tests for spike train models: applications to odour responses af antennal lobe neurons recorded from Periplaneta americana. Congrès de l'ESITO, Roscoff, 15-22 septembre 2007.
Posters :
- C. Pouzat, A. Ridolfi and P. Viot. Spike Sorting with R and GGobi. Congrès "use R" des utilisateurs de R à Vienne, 15-17 Juin 2006.
- C. Pouzat, A. Ridolfi1 and P. Viot. Parallelization of clustering and classification codes without headache using R and the "Simple Network of Workstations" package. JOBIM, Bordeaux 5-7 Juillet 2006.
DATA MINING OF ANIMAL TRANSCRIPTOMES TO ANNOTATE NEUROMUSCULAR PROCESSES OF THE HUMAN GENOME.
Oral Communications:
- M. Robinson-Rechavi and G. Parmentier. A new ontology for gene expression evolution, OGee, provides a link between evo-devo and genome evolution in vertebrates. First and founding meeting of the European society for Evolutionary Developmental biology, Prague, August 16-19, 2006.
Posters :
- G. Parmentier and M. Robinson-Rechavi. OGee: an ontology for gene expression evolution in vertebrates. JOBIM, Bordeaux, July 5-7, 2006.
- G. Parmentier and M. Robinson-Rechavi. BGee: a database for gene expression pattern evolution. First and founding meeting of the European society for Evolutionary Developmental biology, Prague, August 16-19, 2006.
- G. Parmentier and M. Robinson-Rechavi. Using ontology alignment to add homology relationships be-tween species anatomy ontologies. ISMB-ECCB Bioontologies SIG workshop, Vienna, 2007.
